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Graphein 1.4.0
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Graphein 1.4.0

Getting Started

  • Installation
  • Graphein
  • Usage
  • License

Tutorials

  • Protein
    • Graphein - Residue Graph Tutorial
    • Graphein - Atom Graph Tutorial
    • Constructing Graphs from AlphaFold Protein Structure Database
    • Secondary Structure Graphs & Chain Graphs
    • Constructing Subgraphs in Graphein
    • Creating Protein Meshes in Graphein & 3D Visualisation
    • Protein Graph Analytics
    • Interactive Visualisation with Plotly
  • Molecules
    • Creating Molecular Graphs in Graphein
  • RNA Graphs
    • Graphein RNA Graph Construction Tutorial
  • PPI Networks
    • PPI Networks and Structural Interactomics
  • Gene Regulatory Networks
    • Gene Regulatory Network Tutorial

Machine Learning

  • Datasets
    • Graphein Protein Structure Dataloaders
    • PSCDB - Protein Structural Change Database
    • PSCDB - Baselines
    • PPISP - Protein Protein Interaction Structure Prediction

API Reference

  • graphein.protein
  • graphein.molecule
  • graphein.rna
  • graphein.ppi
  • graphein.grn
  • graphein.ml
  • graphein.utils

Contributing

  • Contributing
  • Contributor Covenant Code of Conduct
  • Contributors

PPI Networks#

  • PPI Networks and Structural Interactomics
    • Config
    • Visualisation
    • Node Metadata
    • Graph Metadata
    • Structural Interactomics with AlphaFold2
    • Plot SARS-CoV-2 host-virus proteins (Gordon et al., 2020)
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PPI Networks and Structural Interactomics
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Graphein RNA Graph Construction Tutorial
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